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Vlaic, S., Conrad, T.,  Tokarski-Schnelle, C., Gustafsson, M., Dahmen, U., Guthke, R., Schuster, S. (2018) ModuleDiscoverer: Identification of regulatory modules in protein-protein interaction networks. Sci. Rep., 8, 433.

Lück, A., Klimmasch, L., Großmann, P., Germerodt, S., Kaleta, C. (2018) Computational Investigation of Environment-Noise Interaction in Single-Celled Organisms: The Merit of Expression Stochasticity Depends on the Quality of Environmental Fluctuations. Sci. Rep., 8, 333.



Brandes, S., Dietrich, S., Hünniger, K., Kurzai, O., Figge, M.T. (2017) Migration and Interaction Tracking for Quantitative Analysis of Phagocyte-Pathogen Confrontation Assays. Medical Image Analysis, 36, 172-183.

Hoffmann, B., Svensson, C.M., Straßburger, M., Gebser, B., Irmler, I.M., Kamradt, T., Saluz, H.P., Figge, M.T. (2017) Automated quantification of early bone alterations and pathological bone turnover in experimental arthritis by in vivo PET/CT imaging. Sci Rep, 7, 2217.

Klingberg, A., Hasenberg, A., Ludwig-Portugall, I., Medyukhina, A., Männ, L., Brenzel, A., Engel, D.R., Figge, M.T., Kurts, C., Gunzer, M. (2017) Fully automated evaluation of total glomerular number and capillary tuft size in murine nephritic kidneys using lightsheet microscopy. Journal of the American Society of Nephrology28, 452-459.

Meinel, C., Spartà, G., Dahse, H.-M., Hörhold, F., König, R., Westermann, M., Cseresnyes, Z., Figge, M.T., Hammerschmidt, S., Skerka, C., Zipfel, P.F. (2017) S. pneumoniae from HUS patients bind human plasminogen via the surface protein PspC and use plasmin to damage human endothelial cells. The Journal of Infectious Diseases [Accepted]

Svensson, C.-M., Bondoc, K. G., Pohnert, G., Figge, M.T. (2017) Segmentation of clusters by template rotation expectation maximization. Computer Vision and Image Understanding, 152, 64-72.

Svensson, C.M., Hoffmann, B., Irmler, I., Straßburger, M., Figge, M., Saluz, H.P., *authors contributed equally (2017) Quantification of arthritic bone degradation by analysis of 3D micro-computed tomography data. Sci Rep, 7, 44434.

Ewald, J., Bartl, M., Dandekar, T., Kaleta, C. (2017) Optimality principles reveal a complex interplay of intermediate toxicity and kinetic efficiency in the regulation of prokaryotic metabolism. PLOS Computational Biology, 13, e1005371.

Schuster, S., Fichtner, M., Sasso, S. (2017) Use of Fibonacci numbers in lipidomics – Enumerating various classes offatty acids. Scientific Reports, 7, 39821.

Fichtner, M., Voigt, K., Schuster, S. (2017) The tip and hidden part of the iceberg: Proteinogenic and non-proteinogenicaliphatic amino acids. Biochimica and Biophysica Acta – General Subjects, 1861, 3258-3269.

Böcker, S. (2017) Searching molecular structure databases using tandem MS data: are we there yet?. Curr Opin Chem Biol, 36,1-6.

Bartels, B., Kulkarni, P., Danz, N., Böcker, S., Saluz, H. P., Svatoš, A. (2017) Mapping metabolites from rough terrain: laser ablation electrospray ionization on non-flat samples. RSC Adv, 7, 9045-9050.

Engler, M. S., Scheubert, K., Schubert, U. S., Böcker, S. (2017) Exploring the Limits of the Geometric Copolymerization Model. Polymers, 9,101.

Schymanski, E. L., Ruttkies, C., Krauss, M., Brouard, C., Kind, T., Dührkop, K., Allen, F. R., Vaniya, A., Verdegem, D., Böcker, S., Rousu, J., Shen, H., Tsugawa, H., Sajed, T., Fiehn, O., Ghesquière, B., Neumann, S. (2017) Critical Assessment of Small Molecule Identification 2016: Automated Methods. J Cheminf, 9, 22.

Fleischauer, M., Böcker, S. (2017) Bad Clade Deletion supertrees: A fast and accurate supertree algorithm. Mol Biol Evol, 34, 2408-2421. 

Hufsky, F., Böcker, S. (2017) Mining molecular structure databases: Identification of small molecules based on fragmentation mass spectrometry data. Mass Spectrom. Rev., 36, 624-633.

Fuchs, J., Hölzer, M., Schilling, M., Patzina, C., Schoen, A., Hoenen, T., Zimmer, G., Marz, M., Weber, F., Müller, M., Kochs, G. (2017) Evolution and antiviral specificity of interferon-induced Mx proteins of bats against Ebola-, Influenza-, and other RNA viruses. Journal of Virology,  pp. JVI.00361-17.

Möbius, P., Liebler-Tenorio, E., Hölzer, M., Köhler, H. (2017) Evaluation of associations between genotypes of Mycobacterium avium subsp. paratuberculosis and presence of intestinal lesions characteristic of paratuberculosis. Veterinary Microbiology201, 188-194.

Riege, K., Hölzer, M., Klassert, T. E., Barth, E., Bräuer, J., Collatz, M., Hufsky, F., Mostajo, N., Stock, M., Vogel, B., Slevogt, H., Marz, M. (2017) Massive Effect on LncRNAs in Human Monocytes During Fungal and Bacterial Infections and in Response to Vitamins A and D. Scientific Reports (Nature PG), 7, 40598.

Klassert, T. E., Bräuer, J., Hölzer, M., Stock, M., Riege, K., Zubiria-Barrera, C., Müller, M. M., Rummler, S., Skerka, C., Marz, M., Slevogt, H. (2017) Differential Effects of Vitamins A and D on the Transcriptional Landscape of Human Monocytes during Infection. Scientific Reports (Nature PG), 7, 40599.



Melzer, R., Theißen, G. (2016) The significance of developmental robustness for species diversity. Ann. Bot., 117, 725-732.

Dix, A., Vlaic, S., Guthke, R., Linde, J. (2016) Use of systems biology to decipher host microbial interactions and predict pathological consequences. Clin. Microbiol. Infect., 22, 600-606.

Schulze, S., Schleicher, J., Guthke, R., Linde, J. (2016) How to Predict Molecular Interactions between Species? Front. Microbiol., 7, 442.

Müller, P., Jahn, N., Ring, C., Maiwald, C., Neubert, R., Meißner, C., Brantl, S. (2016) A multistress responsive type I toxin-antitoxin system: bsrE/SR5 from the B. subtilis chromosome. RNA Biol., 13, 511-523. 

Boecker, S., Duehrkop, K. (2016) Fragmentation trees reloaded. J. Cheminf., 8, 5.

Barth, E., Huebler, R., Baniahmad, A., Marz, M. (2016) The Evolution of COP9 signalosome in unicellular and multicellular organisms. Genome Biol. Evol., 8, 1279-1289.

Prauße, M.T.E., Schaeuble, S., Guthke, R., Schuster, S. (2016) Computing the various pathways of penicillin synthesis and their molar yields. Biotechnol. Bioeng., 113,  173-181.

Hennig. A., Markwart. R., Wolff. K., Schubert. K., Cui. Y., Prior. I.A., Esparza-Franco, M.A., Ladds, G., Rubio I. (2016) Feedback activation of neurofibromin terminates growth factor-induced Ras activation. Cell. Commun. Signal., 14, 5.

Ruffo, E., Malacarne, V., Larsen, S.E., Das, R., Patruss,i L., Wülfing ,C., Biskup, C., Kapnick, S.M., Verbist, K., Tedrick, P., Schwartzberg, P.L., Baldari, C.T., Rubio, I., Nichols, K.E., Snow, A.L., Baldanzi, G., Graziani, A. (2016) Inhibition of diacylglycerol kinase α restores restimulation-induced cell death and reduces immunopathology in XLP-1. Sci. Transl. Med., 8, 321ra7.

Richter, F., Leuchtweis, J., Bauer, R., Lehmenkühler , A., Schaible, H.G. (2016) Effects of interleukin-1ß on cortical spreading depolarization and cerebral vasculature.  J. Cereb. Blood Flow Metab., 37, 1791-1802.

Bens, M., Sahm, A., Groth M., Jahn N., Morhart M., Holtze S., Hildebrandt T.B., Platzer M., Szafranski K. (2016) FRAMA: from RNA-seq data to annotated mRNA assemblies. BMC Genomics, 17, 54.

Sponholz, C., Kramer, M., Schöneweck, F., Menzel, U., Inanloo Rahatloo, K., Giamarellos-Bourboulis, E.J., Papavassileiou, V., Lymberopoulou, K., Pavlaki, M., Koutelidakis, I., Perdios, I., Scherag, A., Bauer, M., Platzer, M., Huse, K. (2016) Polymorphisms of cystathionine beta-synthase gene are associated with susceptibility to sepsis. Eur. J. Hum. Genet., 24, 1041-1048.

Brewitz H.H., Goradia, N., Schubert, E., Galler, K., Kühl, T., Syllwasschy, B., Popp, J., Neugebauer, U. Hageluken G., Schiemann, O., Ohlenschläger O., Imhof, D. (2016) Heme interacts with histidine- and tyrosine-based protein motifs and inhibits enzymatic activity of chloramphenicol acetyltransferase from Escherichia coli.
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Wiedemann, C., Bellstedt, P., Häfner, S., Herbst, C., Bordusa, F., Görlach, M., Ohlenschläger, O., Ramachandran, R.A. (2016) Set of Efficient nD NMR Protocols for Resonance Assignments of Intrinsically Disordered Proteins. ChemPhysChem., 17, 1961-1968.

Kumar, S.T., Leppert, J., Bellstedt P., Wiedemann, C., Fändrich, M., Görlach, M. (2016) Solvent Removal Induces a Reversible β-to-α Switch in Oligomeric Aβ Peptide. J. Mol. Biol., 428, 268-273.

Duchardt-Ferner, E., Gottstein-Schmidtke, S.R, Weigand, J.E., Ohlenschläger, O., Wurm, J.-P., Hammann, C., Suess, B., Wöhnert, J. (2016) What a Difference an OH Makes: Conformational Dynamics as the Basis for the Ligand Specificity of the Neomycin-Sensing Riboswitch. Angew. Chem.-Int. Edit., 55, 1527-1530.

Dix, A., Czakai, K., Springer, J., Fliesser, M., Bonin, M., Guthke, R., Schmitt, A.L., Einsele, H., Linde, J., Löffler J. (2016) Genome-wide Expression Profiling Reveals S100B as Biomarker for Invasive Aspergillosis. Front. Microbiol., 7, 320.

Durmus, S, Cakir, T., Guthke, R. (2016) Computational systems biology of pathogen-host interactions. Front. Microbiol., 7, 21.

Guthke, R., Gerber, S., Conrad, T., Vlaic, S., Durmus, S., Cakir, T., Sevilgen, E., Shelest, E., Linde, J. (2016) Data-based reconstruction of gene regulatory networks of fungal pathogens. Front. Microbiol., 7, 570.

Marthandan, S., Baumgart, M., Priebe, S., Groth, M., Schaer, J., Kaether, C., Guthke, R., Cellerino, A., Platzer M., Diekmann, S., Hemmerich, P. (2016) Conserved senescence associated genes and pathways in primary human fibroblasts detected by RNA-seq. PLoS One, 11, e0154531.

Matz-Soja, M., Rennert, C., Schönefeld, K., Aleithe, S., Boettger, J., Schmidt-Heck, W., Weiss, T.S., Hovhannisyan, A., Zellme,r S., Klöting, N., Schulz, A., Kratzsch, J., Guthke, R., Gebhardt, R. (2016) Hedgehog signaling is a potent regulator of liver lipid metabolism and reveals a GLI-code associated with steatosis. eLife, 5, e13308.

Teutschbein, J., Simon, S., Lother, J., Springer, J., Hortschansky, P., Morton, C.O., Löffler, J., Einsele, H., Conneally, E., Rogers, T.R., Guthke, R., Brakhage, A.A., Kniemeyer, O. (2016) Proteomic profiling of serological responses to Aspergillus fumigatus antigens in patients with invasive aspergillosis. J Proteome Res., 15, 1580-1591.

Benoit, J.B., et al. (2016) Unique features of a global human ectoparasite identified through sequencing of the bed bug genome. Nat. Commun., 7, 10165. doi:10.1038/ncomms10165

Beran, F., Rahfeld, P., Luck, K., Nagel, R., Vogel, H., Wielsch, N., Irmisch, S., Ramasamy, S., Gershenzon, J., Heckel, D. G., Köllner, T. G. (2016) Novel family of terpene synthases evolved from trans-isoprenyl diphosphate synthases in a flea beetle. Proc. Natl. Acad. Sci. U. S. A., 113, 2922-2927 doi:10.1073/pnas.1523468113

Berasategui, A., Shukla, S., Salem, H., Kaltenpoth, M. (2016) Potential applications of insect symbionts in biotechnology. Appl. Microbiol. Biotechnol., 100, 1567-1577. doi:10.1007/s00253-015-7186-9

Bretschneider, A., Heckel, D.G., Vogel, H. (2016) Know your ABCs: Characterization and gene expression dynamics of ABC transporters in the polyphagous herbivore Helicoverpa armigera. Insect Biochem. Mol. Biol., 72, 1-9. doi:10.1016/j.ibmb.2016.03.001

Engel, K.C., Stökl, J., Schweizer, R., Vogel, H., Ayasse, M., Ruther, J., Steiger, S. (2016) A hormone-related female anti-aphrodisiac signals temporary infertility and causes sexual abstinence to synchronize parental care. Nat. Commun., 7, 11035. doi:10.1038/ncomms11035.

Groot, A.T., Dekker, T., Heckel, D.G. (2016) Genetic basis of pheromone evolution in moths. Annu. Rev. Entomol., 61, 99-117. doi:10.1146/annurev-ento-010715-023638

Huber, M., Epping, J., Gronover, C.S., Fricke, J., Aziz, Z., Brillatz, T., Swyers, M., Köllner, T.G., Vogel, H., Hammerbacher, A., Triebwasser-Freese, D., Robert, C., Verhoeven, K., Preite, V., Gershenzon, J., Erb, M. (2016) A latex metabolite benefits plant fitness under root herbivore attack. PLoS Biol., 14, e1002332. doi:10.1371/journal.pbio.1002332

Jacobs, C.G., Steiger, S., Heckel, D.G., Wielsch, N., Vilcinskas, A., Vogel, H. (2016) Sex, offspring and carcass determine antimicrobial peptide expression in the burying beetle. Sci Rep., 6, 25409, doi:10.1038/srep25409

Kirsch, R., Heckel, D.G., Pauchet, Y. (2016) How the rice weevil breaks down the pectin network: Enzymatic synergism and sub-functionalization. Insect Biochem. Mol. Biol., 71, 72-82. doi:10.1016/j.ibmb.2016.02.007

Krempl, C., Sporer, T., Reichelt, M., Ahn, S.-J., Heidel-Fischer, H., Vogel, H., Heckel, D.G., Joußen, N. (2016) Potential detoxification of gossypol by UDP-glycosyltransferases in the two Heliothine moth species Helicoverpa armigera and Heliothis virescens. Insect Biochem. Mol. Biol., 71, 49-57. doi:10.1016/j.ibmb.2016.02.005

Roy, A., Walker, W.B., Vogel, H., Chattington, S., Larsson, M.C., Anderson, P., Heckel, D.G., Schlyter, F. (2016) Diet dependent metabolic responses in three generalist insect herbivores Spodoptera spp. Insect Biochem. Mol. Biol., 71, 91-105. doi:10.1016/j.ibmb.2016.02.006

Shelomi, M., Heckel, D.G., Pauchet, Y. (2016) Ancestral gene duplication enabled the evolution of multifunctional cellulases in stick insects (Phasmatodea Insect Biochem. Mol. Biol., 71, 1-11. doi:10.1016/j.ibmb.2016.02.003

Staudacher, H., Kaltenpoth, M., Breeuwer, J.A.J., Menken, S.B.J., Heckel, D.G., Groot, A.T. (2016) Variability of bacterial communities in the moth Heliothis virescens indicates transient association with the host. PLoS One, 11, e0154514. doi:10.1371/journal.pone.0154514

Holmqvist, E., Wright, P.R., Li, L., Bischler, T., Barquist L., Reinhardt, R., Backofen, R., Vogel, J. (2016) Global RNA recognition patterns of post-transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo. Embo J., 9, 991–1011.



Lehnert, T., Timme, S., Pollmächer, J., Hünniger, K., Kurzai, O., Figge, M.T. (2015) Bottom-up modeling approach for the quantitative estimation of parameters in pathogen-host interactions. Front Microbiol., 6, 608.

Kraibooj, K., Schoeler, H., Svensson, C.M., Brakhage, A.A., Figge, M.T. (2015) Automated quantification of the phagocytosis of Aspergillus fumigatus conidia by a novel image analysis algorithm. Front Microbiol., 6, 549.

Pollmächer, J., Figge, M.T. (2015) Deciphering chemokine properties by a hybrid agent-based model of Aspergillus fumigatus infection in human alveoli. Front Microbiol., 6, 503.

Dühring, S., Germerodt, S., Skerka, C., Zipfel, P.F., Dandekar, T., Schuster, S. (2015) Host-pathogen interactions between the human innate immune system and Candida albicans – Understanding and modeling defense and evasion strategies. Front. Microbiol., 6, 625.

Ewald, J., Kötzing, M., Bartl, M., Kaleta, C. (2015) Footprints of Optimal Protein Assembly Strategies in the Operonic Structure of Prokaryotes. Metabolites, 5, 252-269.

D’Souza, G., Waschina, S., Kaleta, C., Kost, C. (2015) Plasticity and epistasis strongly affect bacterial fitness after losing multiple metabolic genes. Evolution69, 1244-1254.

Schmidt, R., Waschina, S., Boettger-Schmidt, D., Kost, C., Kaleta C. (2015) Computing autocatalytic sets to unravel inconsistencies in metabolic network reconstructions. Bioinformatics31, 373-381.

Horn, F., Linde, J., Mattern, D.J., Walther, G., Guthke, R., Brakhage, A.A., Valiante, V. (2015) Draft Genome Sequence of the Fungus* Penicillium brasilianum* MG11. Genome Announc.3, 5.

Schmidt-Heck, W., Matz-Soja, M., Aleithe, S., Marbach, E., Guthke, R., Gebhardt, R. (2015) Fuzzy modeling reveals a dynamic self-sustaining network of the GLI transcription factors controlling important metabolic regulators in adult mouse hepatocytes. Mol Biosyst.11, 2190-2197.

Dix, A., Hünniger, K., Weber, M., Guthke, R., Kurzai, O., Linde, J. (2015) Biomarker-based classification of bacterial and fungal whole-blood infections in a genome-wide expression study. Front Microbiol.6, 171.

Linde, J., Duggan, S., Weber, M., Horn, F., Sieber, P., Hellwig, D., Riege, K., Marz, M., Martin, R., Guthke, R., Kurzai, O. (2015) Defining the transcriptomic landscape of *Candida glabrata* by RNA-Seq. Nucleic Acids Res., 43, 1392-1406.

Priebe, S., Kreisel, C., Horn, F., Guthke, R., Linde, J. (2015) FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species. Bioinformatics, 31, 445-446.


Hünniger, K., Lehnert, T., Bieber, K., Martin, R., Figge, M.T., Kurzai, O. (2014) A virtual infection model quantifies innate effector mechanisms and Candida albicans immune escape in human blood. PLoS Comput Biol., 10, e1003479.

Schacht, T., Oswald, M., Eils, R., Eichmüller, S.B., König, R. (2014) Estimating the activity of transcription factors by the effect on their target genes. Bioinformatics, 30, i401-i407.

Boesger, J., Wagner, V., Weisheit, W., Mittag, M. (2014) Comparative phosphoproteomics to identify targets of the clock-relevant casein kinase 1 in C. reinhardtii Flagella. Methods Mol Biol.1158, 187-202.

Schmidt, C., Schneble, N., Wetzker, R. (2014) The fifth dimension of innate immunity. J Cell Commun Signal., 8, 363-367.

Schwartze, V.U., Winter, S., Shelest, E., Marcet-Houben, M., Horn, F., Wehner, S., Linde, J., Valiante, V., Sammeth, M., Riege, K., Nowrousian, M., Kaerger, K., Jacobsen, I.D., Marz, M., Brakhage, A.A., Gabaldón, T., Böcker, S., Voigt, K. (2014) Gene expansion shapes genome architecture in the human pathogen Lichtheimia corymbifera: an evolutionary genomics analysis in the ancient terrestrial mucorales (Mucoromycotina). PLoS Genet., 10, e1004496.

Baumgart, M., Groth, M., Priebe, S., Savino, A., Testa, G., Dix, A., Ripa, R., Spallotta, F., Gaetano, C., Ori, M., Terzibasi Tozzini, E., Guthke, R., Platzer, M., Cellerino, A. (2014) RNA-seq of the aging brain in the short-lived fish N. furzeri – conserved pathways and novel genes associated with neurogenesis. Aging Cell., 13, 965-974.

Bohl, K., Hummert, S., Werner, S., Basanta, D., Deutsch, A., Schuster, S., Theißen, G., Schroeter, A. (2014) Evolutionary game theory: molecules as players. Mol. Biosyst., 10,  3066-3074.

Hummert, S., Bohl, K., Basanta, D., Deutsch, A., Werner, S., Theißen, G., Schroeter, A., Schuster, S. (2014) Evolutionary game theory: cells as players. Mol. Biosyst., 10, 3044-3065.

Jetha, K., Theißen, G., Melzer, R. (2014) Arabidopsis SEPALLATA proteins differ in cooperative DNA-binding during the formation of floral quartet-like complexes. Nucl. Acids Res., 42, 10927-10942.

Kirsch, R., Gramzow, L., Theißen, G., Siegfried, B.D., Ffrench-Constant, R.H., Heckel, D.G., Pauchet, Y. (2014) Horizontal gene transfer and functional diversification of plant cell wall degrading polygalacturonases: Key events in the evolution of herbivory in beetles. Insect Biochem Mol Biol., 52, 33-50.

Pande, S., Merker, H., Bohl, K., Reichelt, M., Schuster, S., de Figueiredo, L.F., Kaleta, C., Kost, C. (2014) Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria. ISME Journal, 8, 953–962.

Grützmann, K., Szafranski, K., Pohl, M., Voigt, K., Petzold, A., Schuster, S. (2014) Fungal alternative splicing is associated with multicellular complexity and virulence – A genome-wide multi-species study. DNA Research, 21, 37-39.

Szafranski, K., Fritsch, C., Schumann, F., Siebel, L., Sinha, R., Hampe, J., Hiller, M., Englert, C., Huse, K., Platzer, M. (2014) Physiological state co-regulates thousands of mammalian mRNA splicing events at tandem splice sites and alternative exons. Nucl. Acids Res. 42, 8895-8904.

Schleicher, J., Guthke, R., Dahmen, U., Dirsch, O., Holzhütter, H. G., Schuster, S. (2014) A theoretical study of lipid accumulation in the liver – Implications for nonalcoholic fatty liver disease, Biochim. Biophys. Acta – Mol. Cell Biol. Lipids, 1841, 62-69.

Glöckner, G., Hülsmann, N., Schleicher, M., Noegel, A. A., Eichinger, L., Gallinger, C., Pawlowski, J., Sierra, R., Euteneuer, U., Pillet, L., Moustafa, A., Platzer, M., Groth, M., Szafranski, K., Schliwa, M. (2014) The Genome of the Foraminiferan Reticulomyxa filosa, Curr. Biol., 24, 11-18.

Ariyadasa, R., Mascher, M., Nussbaumer, T., Schulte, D., Frenkel, Z., Poursarebani, N., Zhou, R., Steuernagel, B., Gundlach, H., Taudien, S., Felder, M., Platzer, M., Himmelbach, A., Schmutzer, T., Hedley, P. E., Muehlbauer, G. J., Scholz, U., Korol, A., Mayer, K. F., Waugh, R., Langridge, P., Graner, A., Stein, N. (2014) A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms, Plant Physiol. 164, 412-423.

Heinemann, S. H., Hoshi, T., Westerhausen, M., Schiller, A. (2014) Carbon monoxide – physiology, detection and controlled release, Chem Commun (Camb). 50, 3644-3360.

Brantl, S., Brückner, R. (2014) Small regulatory RNAs from low-GC Gram-positive bacteria. RNA Biol., 11, 443-456.


Schmeisser, K., Mansfeld, J., Kuhlow, D., Weimer, S., Zarse, K., Priebe, S., Heiland, I., Birringer, M., Groth, M., Segref, A., Werner, C., Schmeisser, S., Schuster, S., Pfeiffer, A., Guthke, R., Platzer, M., Hoppe, T., Cohen, H., Sinclair, D., Ristow, M. (2013) Role of sirtuins in lifespan regulation is linked to methylation of nicotinamide, Nature Chemical Biology, 9, 693-700.

Priebe, S., Menzel, U., Zarse, K., Groth, M., Platzer, M., Ristow, M., Guthke, R. (2013) Extension of Life Span by Impaired Glucose Metabolism in Caenorhabditis elegans Is Accompanied by Structural Rearrangements of the Transcriptomic Network, PLoS One, 8, e77776.

Sahoo, N., Goradia, N., Ohlenschläger, O., Schönherr, R., Friedrich, M., Plass, W., Kappl, R., Hoshi, T., Heinemann, S.H. (2013) Heme impairs the ball-and-chain inactivation of potassium channels, Proc Natl Acad Sci U S A., 110, E4036-44.

Pauchet, Y., Heckel, D. G. (2013) The genome of the mustard leaf beetle encodes two active xylanases originally acquired from bacteria through horizontal gene transfer, Proc Biol Sci., 280, 20131021.

Wiedemann, C., Bellstedt, P., Görlach, M. (2013) CAPITO–a web server-based analysis and plotting tool for circular dichroism data, Bioinformatics, 29 (14), 1750-1757. [DOI: 10.1093/bioinformatics/btt278]

Mischo, A., Ohlenschläger, O., Hortschansky, P., Ramachandran, R., Görlach, M. (2013) Structural Insights into a Wildtype Domain of the Oncoprotein E6 and Its Interaction with a PDZ Domain, PLoS ONE, (4), e62584, 1-13.

Bartl, M., Kötzing, M., Schuster, S., Li, P., Kaleta, C. (2013) Dynamic optimization identifies optimal programmes for pathway regulation in prokaryotes, Nature Commun., 27, 2243.

Figge, M. T., Osiewacz, H. D., Reichert,  A. S. (2013) Quality control of mitochondria during aging: is there a good and a bad side of mitochondrial dynamics? Bioessays, 35 (4), 314-322.

Kaleta, C., Schäuble, S., Rinas, U., Schuster, S. (2013) Metabolic costs of amino acid and protein production in Escherichia coli, Biotechnol J., 8, 1105-1114.

Dahms, S.O., Kuester, M., Streb, C., Roth, C., Sträter, N. and Than, M.E. (2013) Localization and orientation of heavy-atom cluster compounds in protein crystals using molecular replacement, Acta Crystallographica Section D, 69, 284-297.

Ellenberger, S., Schuster, S. and Wöstemeyer, J. (2013) Correlation between sequence, structure and function for trisporoid processing proteins in the model zygomycete Mucor mucedo, Journal of Theoretical Biology, 320, 66-75.

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Gossmann, T.I., Ziegler, M., Puntervoll, P., de Figueiredo, L.F., Schuster, S. and Heiland, I. (2012) NAD(+) biosynthesis and salvage – a phylogenetic perspective, The FEBS Journal, 279, 3355-3363.

Gramzow, L., Barker, E., Schulz, C., Ambrose, B., Ashton, N., Theissen, G. and Litt, A. (2012) Selaginella genome analysis – entering the ‘homoplasy heaven’ of the MADS world, Frontiers in Plant Science, 3, 214.

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Rubio, I. and Wetzker, R. (2012) Hormetic Signaling Patterns, Dose-Response, 10, 83-90.

Sahoo, N., Schönherr, R., Hoshi, T. and Heinemann, S.H. (2012) Cysteines control the N- and C-linker-dependent gating of KCNH1 potassium channels, Biochimica et Biophysica Acta (BBA) – Biomembranes, 1818, 1187-1195.

Schäuble, S., Klement, K., Marthandan, S., Münch, S., Heiland, I., Schuster, S., Hemmerich, P. and Diekmann, S. (2012) Quantitative model of cell cycle arrest and cellular senescence in primary human fibroblasts, PLoS ONE, 7, e42150.

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The International Barley Genome Sequencing Consortium (2012) A physical, genetic and functional sequence assembly of the barley genome, Nature, 491, 711-716.

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Geletu, A., Hoffmann, A., Klöppel, M. and Li, P. (2011) Monotony analysis and sparse-grid integration for nonlinear chance constrained process optimization, Engineering Optimization, 43, 1019-1041.

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Kaleta, C., de Figueiredo, L.F., Guthke, R., Ristow, M. and Schuster, S. (2011) In silico evidence for gluconeogenesis from fatty acids in humans, PLoS Computational Biology, 7, e1002116.

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Thieme, C.J., Gramzow, L., Lobbes, D. and Theißen, G. (2011) SplamiR – prediction of spliced miRNAs in plants, Bioinformatics, 27, 1215-1223.

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